Did they dispute the mathematics of Kepler's model, or just the reasons for it? Pretty sure it's the latter--a questioning of the nature of Gravity, and Newtonian mechanics.
Two coordinate systems - Albert Einstein and Leopold Infeld wrote in The Evolution of Physics (1938): "Can we formulate physical laws so that they are valid for all CS (=coordinate systems), not only those moving uniformly, but also those moving quite arbitrarily, relative to each other? If this can be done, our difficulties will be over. We shall then be able to apply the laws of nature to any CS. The struggle, so violent in the early days of science, between the views of Ptolemy and Copernicus would then be quite meaningless. Either CS could be used with equal justification. The two sentences, 'the sun is at rest and the Earth moves', or 'the sun moves and the Earth is at rest', would simply mean two different conventions concerning two different CS. Could we build a real relativistic physics valid in all CS; a physics in which there would be no place for absolute, but only for relative, motion? This is indeed possible!"